SNP Profiles matching PA 46 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GG	CC	AA	GG	CC	AA	GG	AA	AA	CT	GG
1._RUQ_952	_	_	AC	GT	CT	AA	GG	CC	AA	_	AA	AA	CT	GG
2._RUQ_33	GG	AT	AA	GG	CC	AA	AG	CC	AA	GG	AA	AA	TT	GG
3._PA_70_[PER]	GG	AT	AA	GG	CC	AA	AG	CC	AA	GG	AA	AA	TT	GG
4._RUQ_1621	_	_	AC	GG	CC	AA	GG	CC	AA	_	AA	AC	CT	GG
5._RUQ_33	_	_	AA	GG	CC	AA	AG	CC	AA	_	AA	AA	TT	GG
6._RUQ_34	_	_	AC	GG	CT	AA	GG	CC	AA	_	AA	AA	CT	GT
7._PA_175_[PER]	GG	AT	CC	GG	CC	AA	GG	CC	AA	GG	AA	AC	CT	GT
8._PA_70_[PER]	GG	AT	AA	GG	CC	AA	AG	CC	AA	GG	AA	AA	TT	GG
9._POUND_4_/A	GG	AT	AA	GG	CC	AA	AG	CC	AA	GG	AA	AA	TT	GG
10._POUND_4_/A	GG	AT	AA	GG	CC	AA	AG	CC	AA	GG	AA	AA	TT	GG
11._POUND_4_/A	GG	AT	AA	GG	CC	AA	AG	CC	AA	GG	AA	AA	TT	GG
12._RUQ_37	GG	AT	CC	GG	CC	AA	GG	CC	AA	GG	AA	AC	CT	GT
13._RUQ_34	GG	AA	AC	GG	CT	AA	GG	CC	AA	GG	AA	AA	CT	GT
14._PA_88_[PER]	GG	AA	AC	GG	CT	AA	GG	CC	AA	GG	AA	AA	CT	GT
15._PA_175_[PER]	GG	AT	CC	GG	CC	AA	GG	CC	AA	GG	AA	AC	CT	GT
16._PA_88_[PER]	GG	AA	AC	GG	CT	AA	GG	CC	AA	GG	AA	AA	CT	GT
17._POUND_4_/A	GG	AT	AA	GG	CC	AA	AG	CC	AA	GG	AA	AA	TT	GG
18._POUND_4_/A	GG	AT	AA	GG	CC	AA	AG	CC	AA	GG	AA	AA	TT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CG	AC	TT	AA	TT	GG	CC	CC	CT	CG	AA	CT	AG	CC
1._RUQ_952	CG	CC	TT	_	_	GG	CC	CC	_	_	_	_	AG	CC
2._RUQ_33	CG	AC	TT	AA	_	GG	_	CC	CT	CG	AA	CC	AG	CC
3._PA_70_[PER]	CG	AC	TT	AA	_	GG	_	CC	CT	CG	AA	CC	AG	CC
4._RUQ_1621	CG	CC	TT	_	_	GG	CC	CC	_	_	_	_	AG	CC
5._RUQ_33	CG	AC	TT	_	_	GG	CC	CC	_	_	_	_	AG	CC
6._RUQ_34	CG	AC	CT	_	_	GG	CC	CC	_	_	_	_	AG	CC
7._PA_175_[PER]	CG	AC	TT	AA	TT	GG	CC	CC	CT	CG	AA	TT	AA	CC
8._PA_70_[PER]	CG	AC	TT	AG	_	GG	_	CC	CT	CG	AA	CC	AG	CC
9._POUND_4_/A	CG	AC	TT	AG	_	GG	_	CC	CT	CG	AA	CC	AG	CC
10._POUND_4_/A	CG	AC	TT	AG	_	GG	_	CC	CT	CG	AA	CC	AG	CC
11._POUND_4_/A	CG	AC	TT	AG	_	GG	_	CC	CT	CG	AA	CC	AG	CC
12._RUQ_37	CG	AC	TT	AA	_	GG	_	CC	CT	CG	AA	TT	AA	CC
13._RUQ_34	CG	AC	CT	AA	_	GG	_	CC	TT	CG	AA	CT	AG	CC
14._PA_88_[PER]	CG	AC	CT	AA	_	GG	_	CC	TT	CG	AA	CT	AG	CC
15._PA_175_[PER]	CG	AC	TT	AA	_	GG	_	CC	CT	CG	AA	TT	AA	CC
16._PA_88_[PER]	CG	AC	CT	AG	_	GG	_	CC	_	CG	AA	CT	AG	CC
17._POUND_4_/A	CG	_	TT	AG	_	GG	_	CC	CT	CG	AA	CC	AG	CC
18._POUND_4_/A	_	AC	TT	AG	_	GG	_	CC	CT	CG	AA	CC	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	GG	CC	X_X	X_X
1._RUQ_952	_	_	_	_	TT	_	_	_	CT	GG	GG	_	X_X	X_X
2._RUQ_33	AG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CC	X_X	X_X
3._PA_70_[PER]	AG	AA	_	CC	TT	CC	AC	TT	CT	GG	AG	CC	X_X	X_X
4._RUQ_1621	_	_	_	_	TT	_	_	_	CT	CC	GG	_	X_X	X_X
5._RUQ_33	_	_	_	_	TT	_	_	_	CT	GG	AG	_	X_X	X_X
6._RUQ_34	_	_	_	_	TT	_	_	_	CT	CG	GG	_	X_X	X_X
7._PA_175_[PER]	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X	X_X
8._PA_70_[PER]	AG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CC	X_X	X_X
9._POUND_4_/A	AG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CC	X_X	X_X
10._POUND_4_/A	AG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CC	X_X	X_X
11._POUND_4_/A	AG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CC	X_X	X_X
12._RUQ_37	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X	X_X
13._RUQ_34	GG	AA	CC	CC	TT	CC	CC	TT	CT	CG	GG	CC	X_X	X_X
14._PA_88_[PER]	GG	AA	CC	CC	TT	CC	CC	TT	CT	CG	GG	CC	X_X	X_X
15._PA_175_[PER]	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X	X_X
16._PA_88_[PER]	GG	AA	CC	CC	TT	CC	CC	TT	CT	CG	GG	CC	X_X	X_X
17._POUND_4_/A	AG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CC	X_X	X_X
18._POUND_4_/A	AG	AA	CC	CC	_	CC	AC	TT	CT	GG	AG	CC	X_X	X_X

Input profile: PA_46_[PER]

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 235

Dapeng Zhang, 2014

1._PA_289_[PER] RUQ_952

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._PA_70_[PER] RUQ_33

92.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._PA_70_[PER]

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D634

Dapeng Zhang, 2016

4._PA_299_[PER] RUQ_1621

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._PA_70_[PER] RUQ_33

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._PA_88_[PER] RUQ_34

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._PA_175_[PER]

91.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F473 T6

Dapeng Zhang, 2014

8._PA_70_[PER]

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 6 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._POUND_4_/A

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8402 8

Dapeng Zhang, 2016

10._POUND_4_/A

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8402 10

Dapeng Zhang, 2016

11._POUND_4_/A

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8402 13

Dapeng Zhang, 2016

12._PA_175_[PER] RUQ_37

90.8 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

13._PA_88_[PER] RUQ_34

90.8 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

14._PA_88_[PER]

90.8 %
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P50 299

Dapeng Zhang, 2016

15._PA_175_[PER]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 738

Dapeng Zhang, 2016

16._PA_88_[PER]

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1313 4 > FP

Dapeng Zhang, 2016

17._POUND_4_/A

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8401 8

Dapeng Zhang, 2016

18._POUND_4_/A

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8402 5

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP836	20	TcSNP872
21	TcSNP878	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520